PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0002s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 386aa    MW: 43506.7 Da    PI: 8.4045
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0002s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.1e-081237127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                          ykt+ C+ +++ G+C++  +C+FaHg+
  Sphfalx0002s0001.1.p 12 YKTKMCSLYMQRGHCPR-QSCSFAHGE 37
                          9****************.*******96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.3E-13943IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1781138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.12E-71142IPR000571Zinc finger, CCCH-type
SMARTSM003560.00731137IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-41237IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MPYTMPYSRD LYKTKMCSLY MQRGHCPRQS CSFAHGESEL RKLPGCYDRG GDLRNTLDRR  60
RSPSCRRERG HHWSYDHRLT HHDRVASSTT KYSCQWIRRD IKKHPDATEP HLSDVSGPID  120
GAEDVAVDEA NDKAGSRSIS TNSQEVLEEQ LQEVLSHNKT LLTQKVTLEH SIEGKVLETT  180
ELSNKIALLE TQLASTHDVC KGLASKTKKF VKVYKAFFRS QEELKRSQAK LMKLVDDTSG  240
DSGPKLDMDV DYVENHTTNN EHPIHEVPTN NQINHRLTTE GPRMLKQENE ANNSNHLSST  300
IEVPVLMEAS QPRKLTTAQE RRRALLQKAL QQGNLSLKTS DGRDGNTPDH KMSCVFSLNG  360
EFRGDPLPST ATRVNHVGVS VTPRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.18e-23C3H family protein